PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 367aa    MW: 40140.4 Da    PI: 8.5462
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-0678100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C k F r+ nL+ H r H
  XP_009149300.1  78 FQCEVCEKGFQRQQNLQLHRRGH 100
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-777100No hitNo description
PROSITE profilePS5015711.15778100IPR007087Zinc finger, C2H2
SMARTSM003550.005478100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355130119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.84E-7149174No hitNo description
SMARTSM00355140154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSSSYNNTIS SSSTQSFPLL AIGANNFNRE ETAMTMNQQR PNSVSPPPRR LRNKPGNPSP  60
DAEVIALTPE EIMATNRFQC EVCEKGFQRQ QNLQLHRRGH NLPFNLKQKS DEEIRRKVYV  120
CPEPTCVYHD PSRALGDLTG IKKHYCRKHG EKKFKCEKCD KFYAVESDCK AHSKICGTKE  180
YRCVCGTKFS RSDSYETHRA FCEALAQESA GNPNLSFTEM LAAAGGSDGS SRDGLHGGAS  240
SALSHNHFGD NSNSGFAPPG AGFNLNRSSS PKFEDFFPQS TNPNHGPTTN FPMQYPSNQG  300
LLARNDQNLM NQHGLINNNN VPSAQLRGSS VAANNFGGSG NVNFQGQMNS LAATSGQQGR  360
PGSSIFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894990.0AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149300.10.0PREDICTED: zinc finger protein NUTCRACKER-like, partial
SwissprotQ8RWX71e-167IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A078I5T20.0A0A078I5T2_BRANA; BnaA06g09410D protein
STRINGBra026203.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-149C2H2-like zinc finger protein